Segmentation of the FIB-SEM dataset. The video shows orthoslices through the volume and rendering of some representative structures. The theca is shown in grey, flagella in green, nuclear envelope in blue, Golgi apparatus in yellow, chloroplast in red, with the associated starch in white, mitochondrion in mint green, trichocysts in pink and purple (short and long class, respectively), mucocysts in orange.
Karel Mocaer, Giulia Mizzon, Manuel Gunkel, Aliaksandr Halavatyi, Anna Steyer, Viola Oorschot, Martin Schorb, Charlotte Le Kieffre, Daniel P. Yee, Fabien Chevalier, Benoit Gallet, Johan Decelle, Yannick Schwab, and Paolo Ronchi
J Cell Sci
2023. 136:None-None; doi: 10.1242/jcs.261355